1998–99 Slovak Cup
| Country |
 Slovakia
|
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|---|---|---|---|
| Teams | 42 | ||
| Champions | Slovan Bratislava | ||
| Runners-up | Dukla Banská Bystrica | ||
|
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The 1998–99 Slovak Cup was the 30th season of Slovakia's annual knock-out cup competition and the sixth since the independence of Slovakia. It began on 29 July 1998 with Preliminary round and ended on 8 May 1999 with the Final. The winners of the competition earned a place in the first round of the UEFA Cup. Spartak Trnava were the defending champions.
First leg: July 29, 1998
Second leg: August 12, 1998
First leg: March 16, 1999
Second leg: April 6, 1999
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