A total of 14 teams compete in the 2009 season which includes the top 12 teams that participated in the 2007-08 season and champions and runners-up of the 2007-08 Malaysia Premier League.

Sarawak FA were relegated at the end of the 2009 Malaysia Super League season after finishing in the bottom place of the league table.

2007-08 Malaysia Premier League champions Kuala Muda Naza FC and runners-up PLUS FC secured direct promotion to the Super League.

Note:
1 Promoted as champions from 2007-08 Malaysia Premier League
2 Promoted as runners-up from 2007-08 Malaysia Premier League

Pld = Matches played; W = Matches won; D = Matches drawn; L = Matches lost; GF = Goals for; GA = Goals against; GD = Goal difference; Pts = Points

Updated to games played on 1 August 2009.
Source: Results TM Super League
1 ^{^} The home team is listed in the left-hand column.
Colours: Blue = home team win; Yellow = draw; Red = away team win.
For coming matches, an a indicates there is an article about the match.

The match first leg match for Harimau Muda and KL PLUS FC played on 24 January 2009. The second leg played on 4 February 2009. The first legs of other match played on 31 January 2009. The second legs played on 3 February 2009.

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