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Seed production and gene diversity


Genetic diversity is often a major consideration in e g forest crops.

Consider the gene pool of a seed orchard crop or other source of seeds with parents. The gene pool is large as there are many seeds in a seed crop, so there is no genetic drift. The probability that the first gene originates from genotype i in the seed orchard is pi, and the probability that the second originates from genotype j is pj. The probability that these two genes originate from the orchard genotypes i and j are identical by descent (IBD) is θij. This is the Malecot's method of coancestry (or "coefficient of kinship"; "coefficient of relationship" is a similar measure which can be computed) between genotype i and j. The probability that any pair of genes is IBD, Θ, can be found by adding over all possible pairs of genes from N parents. Formula for the group coancestry (from which gene diversity can be obtained) of seed orchard crops.

Θ= pipjθij.
The group coancestry of a seed orchard crop can be divided in two terms, one for self-coancestry and one for cross-coancestry.

Θ= pi2(1+Fi)/2 + pipjθij, the last summation excluding j=i.


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